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PUB14 plant U-box 14 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824650, updated on 18-Sep-2024

Summary

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Official Symbol
PUB14
Official Full Name
plant U-box 14
Primary source
TAIR:AT3G54850
Locus tag
AT3G54850
See related
Araport:AT3G54850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPUB14; plant U-box 14
Summary
Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro.
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Genomic context

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See PUB14 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (20321353..20324020)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ras-related small GTP-binding family protein Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene Armadillo/beta-catenin repeat family protein / kinesin motor family protein Neighboring gene zinc finger protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and biochemical function of a prototypical Arabidopsis U-box domain. Andersen P, et al. J Biol Chem, 2004 Sep 17. PMID 15231834
  2. A Decoy Library Uncovers U-Box E3 Ubiquitin Ligases That Regulate Flowering Time in Arabidopsis. Feke AM, et al. Genetics, 2020 Jul. PMID 32434795, Free PMC Article
  3. PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. Bowen AJ, et al. J Mol Biol, 2010 Feb 5. PMID 19962994
  4. Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Samuel MA, et al. Plant Physiol, 2008 Aug. PMID 18552232, Free PMC Article
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A Decoy Library Uncovers U-Box E3 Ubiquitin Ligases That Regulate Flowering Time in Arabidopsis.
    Title: A Decoy Library Uncovers U-Box E3 Ubiquitin Ligases That Regulate Flowering Time in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_115342.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane receptor protein serine/threonine kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant U-box 14
NP_191045.2
  • plant U-box 14 (PUB14); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 7501 Blast hits to 4963 proteins in 297 species: Archae - 2; Bacteria - 29; Metazoa - 1804; Fungi - 795; Plants - 4036; Viruses - 3; Other Eukaryotes - 832 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20321353..20324020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115342.5 → NP_191045.2  plant U-box 14 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191045.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ40, Q9SV34
    UniProtKB/TrEMBL
    A0A178V9F4, A0A5S9XKW0, A0A7G2ESZ4
    Conserved Domains (3) summary
    smart00504
    Location:251 → 314
    Ubox; Modified RING finger domain
    PLN03200
    Location:336 → 579
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:380 → 416
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZ40.1

Gene LinkOut

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