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PIP2;5 plasma membrane intrinsic protein 2;5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824647, updated on 18-Sep-2024

Summary

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Official Symbol
PIP2;5
Official Full Name
plasma membrane intrinsic protein 2;5
Primary source
TAIR:AT3G54820
Locus tag
AT3G54820
See related
Araport:AT3G54820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PIP2D; plasma membrane intrinsic protein 2;5; PLASMA MEMBRANE INTRINSIC PROTEIN 2D
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Genomic context

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See PIP2;5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (20301759..20304309)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pleckstrin homology (PH) and lipid-binding START domains-containing protein Neighboring gene Plant-specific GATA-type zinc finger transcription factor family protein Neighboring gene pseudo Neighboring gene Zim17-type zinc finger protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasma Membrane Aquaporin Members PIPs Act in Concert to Regulate Cold Acclimation and Freezing Tolerance Responses in Arabidopsis thaliana. Rahman A, et al. Plant Cell Physiol, 2020 Apr 1. PMID 31999343
  2. Overexpression of PIP2;5 aquaporin alleviates effects of low root temperature on cell hydraulic conductivity and growth in Arabidopsis. Lee SH, et al. Plant Physiol, 2012 May. PMID 22434042, Free PMC Article
  3. The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants. Johanson U, et al. Plant Physiol, 2001 Aug. PMID 11500536, Free PMC Article
  4. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Plasma Membrane Aquaporin Members PIPs Act in Concert to Regulate Cold Acclimation and Freezing Tolerance Responses in Arabidopsis thaliana.
    Title: Plasma Membrane Aquaporin Members PIPs Act in Concert to Regulate Cold Acclimation and Freezing Tolerance Responses in Arabidopsis thaliana.
  2. Low root temperature had no effect on growth in plants overexpressing PIP2;5.
    Title: Overexpression of PIP2;5 aquaporin alleviates effects of low root temperature on cell hydraulic conductivity and growth in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_115339.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables water channel activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within water transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plasma membrane intrinsic protein 2;5
NP_191042.1
  • plasma membrane intrinsic protein 2;5 (PIP2;5); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10866 Blast hits to 10851 proteins in 2236 species: Archae - 80; Bacteria - 5189; Metazoa - 1483; Fungi - 451; Plants - 2536; Viruses - 2; Other Eukaryotes - 1125 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20301759..20304309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115339.3 → NP_191042.1  plasma membrane intrinsic protein 2;5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191042.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV31
    UniProtKB/TrEMBL
    A0A5S9XKZ5, A0A654FFU4
    Conserved Domains (1) summary
    pfam00230
    Location:30 → 265
    MIP; Major intrinsic protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SV31.1

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