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Proline-rich extensin-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824623, updated on 18-Sep-2024

Summary

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Official Full Name
Proline-rich extensin-like family protein
Primary source
TAIR:AT3G54580
Locus tag
AT3G54580
See related
Araport:AT3G54580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (20200573..20203919, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene histone H2A 11 Neighboring gene Plant calmodulin-binding protein-like protein Neighboring gene hydroxyproline-rich glycoprotein Neighboring gene Class I glutamine amidotransferase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115315.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of cell wall IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Proline-rich extensin-like family protein
NP_191021.2
  • Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G28550.1); Has 478331 Blast hits to 51256 proteins in 1906 species: Archae - 1077; Bacteria - 77248; Metazoa - 176231; Fungi - 77872; Plants - 71303; Viruses - 12471; Other Eukaryotes - 62129 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20200573..20203919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115315.3 → NP_191021.2  Proline-rich extensin-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JCZ1
Nucleotide Protein
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