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C2H2 and C2HC zinc fingers superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824549, updated on 18-Sep-2024

Summary

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Official Full Name
C2H2 and C2HC zinc fingers superfamily protein
Primary source
TAIR:AT3G53820
Locus tag
AT3G53820
See related
Araport:AT3G53820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (19938564..19939231)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Fes1B Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115242.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
C2H2 and C2HC zinc fingers superfamily protein
NP_190950.1
  • C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: telomerase activator1 (TAIR:AT3G09290.1); Has 810 Blast hits to 810 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 763; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19938564..19939231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115242.2 → NP_190950.1  C2H2 and C2HC zinc fingers superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190950.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCK1, A0A384L7J9, Q9M344
    Conserved Domains (2) summary
    sd00017
    Location:23 → 43
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13894
    Location:21 → 43
    zf-C2H2_4; C2H2-type zinc finger
Nucleotide Protein
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