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RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824518, updated on 18-Sep-2024

Summary

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Official Symbol
RS2Z32
Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
Primary source
TAIR:AT3G53500
Locus tag
AT3G53500
See related
Araport:AT3G53500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
arginine/serine-rich zinc knuckle-containing protein 32; At-RS2Z; RSZ32
Summary
Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Genomic context

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See RS2Z32 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (19834240..19837088, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene pleiotropic drug resistance 9 Neighboring gene valine-tRNA ligase Neighboring gene ABC-2 type transporter family protein Neighboring gene UDP-glucuronic acid decarboxylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. Lopato S, et al. J Biol Chem, 2002 Oct 18. PMID 12176998
  2. Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. de la Fuente van Bentem S, et al. Nucleic Acids Res, 2006. PMID 16807317, Free PMC Article
  3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339619.1
NM_115210.6
NM_180684.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing NAS
Non-traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within mRNA splicing, via spliceosome TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
NP_190918.3
  • RSZ32; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: arginine/serine-rich zinc knuckle-containing protein 33 (TAIR:AT2G37340.1); Has 30335 Blast hits to 26620 proteins in 660 species: Archae - 6; Bacteria - 352; Metazoa - 8518; Fungi - 1445; Plants - 2334; Viruses - 16371; Other Eukaryotes - 1309 (source: NCBI BLink).
NP_851015.1
  • RSZ32; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: arginine/serine-rich zinc knuckle-containing protein 33 (TAIR:AT2G37340.1); Has 25826 Blast hits to 22471 proteins in 477 species: Archae - 0; Bacteria - 10; Metazoa - 6096; Fungi - 978; Plants - 1426; Viruses - 16372; Other Eukaryotes - 944 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19834240..19837088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115210.6 → NP_190918.3  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190918.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LPN6, Q9FYB7
    UniProtKB/TrEMBL
    A0A178V7M8, A0A5S9XKG9
    Conserved Domains (2) summary
    PTZ00368
    Location:86 → 142
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:12 → 81
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001339619.1 → NP_001326575.1  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7R7, A0A5S9XKG9
    Conserved Domains (2) summary
    PTZ00368
    Location:45 → 101
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 40
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. NM_180684.4 → NP_851015.1  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851015.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7R7, A0A5S9XKG9
    Conserved Domains (2) summary
    PTZ00368
    Location:45 → 101
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cl17169
    Location:1 → 40
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FYB7.1

Gene LinkOut

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