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RIP3 ROP interactive partner 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824503, updated on 18-Sep-2024

Summary

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Official Symbol
RIP3
Official Full Name
ROP interactive partner 4
Primary source
TAIR:AT3G53350
Locus tag
AT3G53350
See related
Araport:AT3G53350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Microtubule Depletion Domain 1; MIDD1; RIP4; ROP interactive partner 3; ROP interactive partner 4
Summary
Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.
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Genomic context

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See RIP3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (19779978..19782750, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B10 Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microtubule-associated phase separation of MIDD1 tunes cell wall spacing in xylem vessels in Arabidopsis thaliana. Higa T, et al. Nat Plants, 2024 Jan. PMID 38172572
  2. Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns. Oda Y, et al. Plant Cell, 2013 Nov. PMID 24280391, Free PMC Article
  3. Initiation of cell wall pattern by a Rho- and microtubule-driven symmetry breaking. Oda Y, et al. Science, 2012 Sep 14. PMID 22984069
  4. RIP3 and AtKinesin-13A - a novel interaction linking Rho proteins of plants to microtubules. Mucha E, et al. Eur J Cell Biol, 2010 Dec. PMID 20832900
  5. RIP1 (ROP Interactive Partner 1)/ICR1 marks pollen germination sites and may act in the ROP1 pathway in the control of polarized pollen growth. Li S, et al. Mol Plant, 2008 Nov. PMID 19825600, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339612.1
NM_001339613.1
NM_001339614.1
NM_001339615.1
NM_001339616.1
NM_001339617.1
NM_115195.3
NM_202694.2
NM_202695.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cortical microtubule organization IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within plant-type cell wall organization IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
ROP interactive partner 4
NP_190903.2
  • ROP interactive partner 4 (RIP4); INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 125494 Blast hits to 67286 proteins in 3149 species: Archae - 1620; Bacteria - 20566; Metazoa - 57605; Fungi - 11002; Plants - 6921; Viruses - 471; Other Eukaryotes - 27309 (source: NCBI BLink).
NP_974423.1
  • ROP interactive partner 4 (RIP4); BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974424.1
  • ROP interactive partner 4 (RIP4); BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19779978..19782750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115195.3 → NP_190903.2  ROP interactive partner 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190903.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYU8, Q9LFI2
    UniProtKB/TrEMBL
    A0A178VBU9, A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:69 → 379
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_001339614.1 → NP_001326317.1  ROP interactive partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNW9, A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:80 → 390
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. NM_001339613.1 → NP_001326320.1  ROP interactive partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYU8, Q9LFI2
    UniProtKB/TrEMBL
    A0A178VBU9, A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:69 → 379
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. NM_001339612.1 → NP_001326319.1  ROP interactive partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNW9, A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:80 → 390
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. NM_001339615.1 → NP_001326318.1  ROP interactive partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYU8, Q9LFI2
    UniProtKB/TrEMBL
    A0A178VBU9, A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:69 → 379
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. NM_202694.2 → NP_974423.1  ROP interactive partner 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974423.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:67 → 377
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. NM_001339616.1 → NP_001326322.1  ROP interactive partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNX4, A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:78 → 388
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. NM_202695.1 → NP_974424.1  ROP interactive partner 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974424.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XKM5
    Conserved Domains (1) summary
    TIGR02168
    Location:67 → 377
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  9. NM_001339617.1 → NP_001326321.1  ROP interactive partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNX3, A0A5S9XKM5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYU8.2

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