U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SK6 SKP1-like 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824472, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
SK6
Official Full Name
SKP1-like 6
Primary source
TAIR:AT3G53060
Locus tag
AT3G53060
See related
Araport:AT3G53060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ASK6; SKP1-like 6
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SK6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (19670166..19670423)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein, putative / LEA protein Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene ncRNA Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
  2. The Arabidopsis F-box protein SKP1-INTERACTING PARTNER 31 modulates seed maturation and seed vigor by targeting JASMONATE ZIM DOMAIN proteins independently of jasmonic acid-isoleucine. Varshney V, et al. Plant Cell, 2023 Sep 27. PMID 37462265, Free PMC Article
  3. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_115166.1

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex TAS
Traceable Author Statement
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SKP1-like 6
NP_566978.1
  • SKP1-like 6 (SK6); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 5 (TAIR:AT3G60020.1); Has 1174 Blast hits to 1172 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 171; Plants - 431; Viruses - 9; Other Eukaryotes - 115 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19670166..19670423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115166.1 → NP_566978.1  SKP1-like 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566978.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MF26, Q1PEF6, Q9LF86
    Conserved Domains (1) summary
    smart00512
    Location:2 → 73
    Skp1; Found in Skp1 protein family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1PEF6.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools