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STV1 Ribosomal protein L24e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824468, updated on 18-Sep-2024

Summary

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Official Symbol
STV1
Official Full Name
Ribosomal protein L24e family protein
Primary source
TAIR:AT3G53020
Locus tag
AT3G53020
See related
Araport:AT3G53020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RIBOSOMAL PROTEIN L24; RPL24; RPL24B; SHORT VALVE1
Summary
RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.
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Genomic context

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See STV1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (19660488..19662025, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ser/arg-rich protein kinase 4 Neighboring gene late embryogenesis abundant protein, putative / LEA protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Nishimura T, et al. Plant Cell, 2005 Nov. PMID 16227452, Free PMC Article
  2. STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis. Li S, et al. Proc Natl Acad Sci U S A, 2017 Feb 7. PMID 28115696, Free PMC Article
  3. The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant. Tiruneh BS, et al. BMC Biol, 2013 Dec 30. PMID 24377433, Free PMC Article
  4. Ribosomal proteins promote leaf adaxial identity. Yao Y, et al. Development, 2008 Apr. PMID 18305007
  5. The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts. Chi W, et al. Plant Physiol, 2012 Feb. PMID 22170977, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data suggest that SHORT VALVE 1 (STV1) promotes miRNA biogenesis through facilitating the recruitment of pri-miRNAs to their processing complex.
    Title: STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis.
  2. These data represent the first genome-wide analysis of translation in a eukaryote defective in the large ribosomal subunit. RPL24 and eIF3h play similar but non-identical roles in eukaryotic translation.
    Title: The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant.
  3. In addition to the role of RPL24 in ribosome-related whole-plant growth and the development of several organs, RPL24 functions specifically in auxin-mediated apical-basal patterning of the gynoecium. [RPL24B]
    Title: The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_115162.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in adaxial/abaxial pattern specification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within auxin-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within gynoecium development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in leaf morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
part_of cytosolic large ribosomal subunit HDA PubMed 
located_in nucleolus HDA PubMed 
colocalizes_with nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Ribosomal protein L24e family protein
NP_190870.1
  • SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: ribosomal protein L24 (TAIR:AT2G36620.1); Has 1463 Blast hits to 1456 proteins in 346 species: Archae - 110; Bacteria - 20; Metazoa - 460; Fungi - 300; Plants - 340; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19660488..19662025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115162.4 → NP_190870.1  Ribosomal protein L24e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190870.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P38666, Q33DV0, Q56Z81, Q9LF90
    UniProtKB/TrEMBL
    A0A178V7Q9, A0A5S9XKB3
    Conserved Domains (1) summary
    pfam01246
    Location:4 → 64
    Ribosomal_L24e; Ribosomal protein L24e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P38666.2

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