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mediator of RNA polymerase II transcription subunit-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824452, updated on 18-Sep-2024

Summary

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Official Full Name
mediator of RNA polymerase II transcription subunit-like protein
Primary source
TAIR:AT3G52860
Locus tag
AT3G52860
See related
Araport:AT3G52860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (19591848..19592768, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ankyrin repeat protein Neighboring gene beta-galactosidase 2 Neighboring gene vacuolar sorting receptor homolog 1 Neighboring gene ncRNA Neighboring gene IQ calmodulin-binding motif family protein Neighboring gene monodehydroascorbate reductase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Redox regulation of the MED28 and MED32 mediator subunits is important for development and senescence. Shaikhali J, et al. Protoplasma, 2016 May. PMID 26195288
  2. Biochemical and redox characterization of the mediator complex and its associated transcription factor GeBPL, a GLABROUS1 enhancer binding protein. Shaikhali J, et al. Biochem J, 2015 Jun 15. PMID 25877331
  3. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115146.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit-like protein
NP_190854.1
  • unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19591848..19592768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115146.6 → NP_190854.1  mediator of RNA polymerase II transcription subunit-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190854.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LFA5
    UniProtKB/TrEMBL
    A0A178VE66, A0A5S9XKA9
    Conserved Domains (1) summary
    pfam11594
    Location:44 → 142
    Med28; Mediator complex subunit 28
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFA5.1

Gene LinkOut

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