U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

A20/AN1-like zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824446, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
A20/AN1-like zinc finger family protein
Primary source
TAIR:AT3G52800
Locus tag
AT3G52800
See related
Araport:AT3G52800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (19569256..19570710)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Purple acid phosphatases superfamily protein Neighboring gene peptidoglycan-binding LysM domain-containing protein Neighboring gene purple acid phosphatase 21 Neighboring gene purple acid phosphatase 22

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_115140.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
A20/AN1-like zinc finger family protein
NP_190848.1
  • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1056 Blast hits to 1045 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 9; Plants - 478; Viruses - 6; Other Eukaryotes - 118 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19569256..19570710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339589.1 → NP_001325951.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94B40, Q9LXI5
    UniProtKB/TrEMBL
    A0A178VIF4, A0A5S9XL14
    Conserved Domains (2) summary
    smart00154
    Location:111 → 148
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:14 → 36
    zf-A20; A20-like zinc finger

  2. NM_115140.3 → NP_190848.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190848.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94B40, Q9LXI5
    UniProtKB/TrEMBL
    A0A178VIF4, A0A5S9XL14
    Conserved Domains (2) summary
    smart00154
    Location:111 → 148
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:14 → 36
    zf-A20; A20-like zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94B40.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools