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Zn-dependent exopeptidases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824430, updated on 18-Sep-2024

Summary

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Official Full Name
Zn-dependent exopeptidases superfamily protein
Primary source
TAIR:AT3G52640
Locus tag
AT3G52640
See related
Araport:AT3G52640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
17
Sequence:
Chromosome: 3; NC_003074.8 (19514837..19520596, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GATA zinc finger protein Neighboring gene uncharacterized protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gamma-secretase subunits associate in intracellular membrane compartments in Arabidopsis thaliana. Smolarkiewicz M, et al. J Exp Bot, 2014 Jul. PMID 24723404, Free PMC Article
  2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001035771.1
NM_115124.5
NM_202690.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi-associated vesicle IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
Zn-dependent exopeptidases superfamily protein
NP_001030848.1
  • Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_190832.3
  • Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 236 Blast hits to 233 proteins in 88 species: Archae - 0; Bacteria - 4; Metazoa - 152; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
NP_974419.1
  • Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19514837..19520596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115124.5 → NP_190832.3  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190832.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GUM5, Q9LXJ9, Q9LXK0
    UniProtKB/TrEMBL
    A0A178VBP2, A0A7G2ESD8
    Conserved Domains (1) summary
    pfam05450
    Location:251 → 444
    Nicastrin; Nicastrin

  2. NM_202690.2 → NP_974419.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974419.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FF76, F4J819
    Conserved Domains (1) summary
    cd03881
    Location:48 → 658
    M28_Nicastrin; M28 Zn-peptidase nicastrin, a main component of gamma-secretase complex

  3. NM_001035771.1 → NP_001030848.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030848.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FF76, F4J820
    Conserved Domains (1) summary
    cl14876
    Location:251 → 440
    Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GUM5.1

Gene LinkOut

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