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KCS15 3-ketoacyl-CoA synthase 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824381, updated on 18-Sep-2024

Summary

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Official Symbol
KCS15
Official Full Name
3-ketoacyl-CoA synthase 15
Primary source
TAIR:AT3G52160
Locus tag
AT3G52160
See related
Araport:AT3G52160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
3-ketoacyl-CoA synthase 15
Summary
Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
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Genomic context

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See KCS15 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (19344972..19346668, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Phosphoglycerate mutase family protein Neighboring gene DNA binding protein Neighboring gene dual specificity protein phosphatase (DsPTP1) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001339560.1
NM_115076.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
3-ketoacyl-CoA synthase 15
NP_190784.1
  • 3-ketoacyl-CoA synthase 15 (KCS15); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: lipid biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 10 (TAIR:AT2G26250.1); Has 4252 Blast hits to 4241 proteins in 1006 species: Archae - 0; Bacteria - 1239; Metazoa - 0; Fungi - 2; Plants - 2897; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19344972..19346668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115076.4 → NP_190784.1  3-ketoacyl-CoA synthase 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190784.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFQ2, Q9SUY9
    UniProtKB/TrEMBL
    A0A178VHW8, A0A5S9XKU0, A0MF23
    Conserved Domains (1) summary
    PLN02192
    Location:13 → 449
    PLN02192; 3-ketoacyl-CoA synthase

  2. NM_001339560.1 → NP_001327019.1  3-ketoacyl-CoA synthase 15 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LR12
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SUY9.1

Gene LinkOut

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