U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

scpl39 serine carboxypeptidase-like 39 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824365, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
scpl39
Official Full Name
serine carboxypeptidase-like 39
Primary source
TAIR:AT3G52020
Locus tag
AT3G52020
See related
Araport:AT3G52020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
serine carboxypeptidase-like 39
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See scpl39 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (19299309..19301148)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene serine carboxypeptidase-like 37 Neighboring gene F-box family protein with WD40/YVTN repeat doamin Neighboring gene ncRNA Neighboring gene 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
serine carboxypeptidase-like 39
NP_190770.1
  • serine carboxypeptidase-like 39 (scpl39); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 40 (TAIR:AT3G63470.1); Has 3987 Blast hits to 3909 proteins in 492 species: Archae - 0; Bacteria - 509; Metazoa - 656; Fungi - 856; Plants - 1493; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19299309..19301148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115061.2 → NP_190770.1  serine carboxypeptidase-like 39 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190770.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV02
    UniProtKB/TrEMBL
    A0A178VMY5, A0A5S9XK02, A0A654FGB7
    Conserved Domains (1) summary
    pfam00450
    Location:84 → 494
    Peptidase_S10; Serine carboxypeptidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SV02.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools