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EM1 Stress induced protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824344, updated on 18-Sep-2024

Summary

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Official Symbol
EM1
Official Full Name
Stress induced protein
Primary source
TAIR:AT3G51810
Locus tag
AT3G51810
See related
Araport:AT3G51810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1; AT3; ATEM1; EM1 PROTEIN; GEA1; GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1; LATE EMBRYOGENESIS ABUNDANT 1
Summary
Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.
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Genomic context

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See EM1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (19214722..19215831)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein G1P-related 1 Neighboring gene metallopeptidase M24 family protein Neighboring gene ncRNA Neighboring gene UbiA prenyltransferase family protein Neighboring gene SAC domain-containing protein 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation. Gaubier P, et al. Mol Gen Genet, 1993 Apr. PMID 8492809
  2. 14-3-3 Proteins are components of the transcription complex of the ATEM1 promoter in Arabidopsis. del Viso F, et al. Planta, 2007 Dec. PMID 17701425
  3. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339533.1
NM_115040.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy TAS
Traceable Author Statement
more info
  
acts_upstream_of_or_within response to abscisic acid TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
Stress induced protein
NP_190749.1
  • LATE EMBRYOGENESIS ABUNDANT 1 (EM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: dry seed stage, seedling growth, seed maturation stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 5, conserved site (InterPro:IPR022377), Stress induced protein (InterPro:IPR000389); BEST Arabidopsis thaliana protein match is: Stress induced protein (TAIR:AT2G40170.1); Has 1194 Blast hits to 542 proteins in 139 species: Archae - 84; Bacteria - 323; Metazoa - 232; Fungi - 23; Plants - 322; Viruses - 14; Other Eukaryotes - 196 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19214722..19215831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115040.3 → NP_190749.1  Stress induced protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190749.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q07187
    UniProtKB/TrEMBL
    A0A178V532, A0A5S9XJY4, A0A654FEY7
    Conserved Domains (1) summary
    pfam00477
    Location:1 → 149
    LEA_5; Small hydrophilic plant seed protein

  2. NM_001339533.1 → NP_001326558.1  Stress induced protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q42489
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q07187.1

Gene LinkOut

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