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pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824292, updated on 18-Sep-2024

Summary

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Official Full Name
pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
Primary source
TAIR:AT3G51290
Locus tag
AT3G51290
See related
Araport:AT3G51290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Altered Phosphate Starvation Response 1; APSR1
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (19039512..19044371)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein serine/threonine kinase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene RHO-related protein from plants 1 Neighboring gene VPS35 homolog C Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. APSR1, a novel gene required for meristem maintenance, is negatively regulated by low phosphate availability. González-Mendoza V, et al. Plant Sci, 2013 May. PMID 23498857
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_114988.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within meristem maintenance IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632)
NP_001190052.1
  • FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G02110.1).
NP_190697.2
  • Protein of unknown function (DUF630); Protein of unknown function (DUF632); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G02110.1); Has 36219 Blast hits to 19553 proteins in 1081 species: Archae - 111; Bacteria - 4892; Metazoa - 13250; Fungi - 3535; Plants - 7790; Viruses - 1372; Other Eukaryotes - 5269 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19039512..19044371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203123.1 → NP_001190052.1  pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190052.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJS9, A0A654FET7, F4J3B2
    Conserved Domains (4) summary
    cd04133
    Location:635 → 779
    Rop_like; Rho-related protein from plants (Rop)-like
    smart00173
    Location:608 → 778
    RAS; Ras subfamily of RAS small GTPases
    pfam04782
    Location:203 → 509
    DUF632; Protein of unknown function (DUF632)
    pfam04783
    Location:1 → 59
    DUF630; Protein of unknown function (DUF630)

  2. NM_001339498.1 → NP_001327368.1  pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VBJ0, A0A1I9LS38, Q9SD19
    UniProtKB/TrEMBL
    A0A384KMY1
    Conserved Domains (2) summary
    pfam04782
    Location:202 → 507
    DUF632; Protein of unknown function (DUF632)
    pfam04783
    Location:1 → 59
    DUF630; Protein of unknown function (DUF630)

  3. NM_114988.3 → NP_190697.2  pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190697.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J3B3
    Conserved Domains (2) summary
    pfam04782
    Location:203 → 503
    DUF632; Protein of unknown function (DUF632)
    pfam04783
    Location:1 → 59
    DUF630; Protein of unknown function (DUF630)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A178VBJ0.1

Gene LinkOut

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