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LPPepsilon1 Phosphatidic acid phosphatase (PAP2) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824256, updated on 18-Sep-2024

Summary

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Official Symbol
LPPepsilon1
Official Full Name
Phosphatidic acid phosphatase (PAP2) family protein
Primary source
TAIR:AT3G50920
Locus tag
AT3G50920
See related
Araport:AT3G50920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
lipid phosphate phosphatase epsilon 1
Summary
Encodes a phosphatidic acid phosphatase that can be detected in chloroplast membrane fractions. This gene (LPPepsilon1) and LPPepsilon2, appear to be less important for diacylglycerol formation in the plastids than LPPgamma.
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Genomic context

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See LPPepsilon1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (18922304..18923772, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene netrin receptor DCC Neighboring gene Defensin-like (DEFL) family protein Neighboring gene cytochrome BC1 synthesi

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chloroplast phosphatases LPPγ and LPPε1 facilitate conversion of extraplastidic phospholipids to galactolipids. Cook R, et al. Plant Physiol, 2024 May 31. PMID 38401529
  2. Plastidic phosphatidic acid phosphatases identified in a distinct subfamily of lipid phosphate phosphatases with prokaryotic origin. Nakamura Y, et al. J Biol Chem, 2007 Sep 28. PMID 17652095
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Chloroplast phosphatases LPPgamma and LPPepsilon1 facilitate conversion of extraplastidic phospholipids to galactolipids.
    Title: Chloroplast phosphatases LPPγ and LPPε1 facilitate conversion of extraplastidic phospholipids to galactolipids.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035758.3
NM_114952.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within diacylglycerol biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Phosphatidic acid phosphatase (PAP2) family protein
NP_001030835.1
  • Phosphatidic acid phosphatase (PAP2) family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: Phosphatidic acid phosphatase (PAP2) family protein (TAIR:AT5G66450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_190661.2
  • Phosphatidic acid phosphatase (PAP2) family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: Phosphatidic acid phosphatase (PAP2) family protein (TAIR:AT5G66450.1); Has 367 Blast hits to 367 proteins in 161 species: Archae - 0; Bacteria - 52; Metazoa - 96; Fungi - 101; Plants - 80; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18922304..18923772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001035758.3 → NP_001030835.1  Phosphatidic acid phosphatase (PAP2) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030835.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EQD4
    Conserved Domains (2) summary
    COG0671
    Location:56 → 198
    PgpB; Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]
    cd03382
    Location:49 → 183
    PAP2_dolichyldiphosphatase; PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is ...

  2. NM_114952.4 → NP_190661.2  Phosphatidic acid phosphatase (PAP2) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190661.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J220, Q9SVK7
    UniProtKB/TrEMBL
    A0A5S9XKF4, A0A654FEQ1
    Conserved Domains (1) summary
    cd03382
    Location:100 → 234
    PAP2_dolichyldiphosphatase; PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J220.1

Gene LinkOut

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