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esterase/lipase/thioesterase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824243, updated on 18-Sep-2024

Summary

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Official Full Name
esterase/lipase/thioesterase family protein
Primary source
TAIR:AT3G50790
Locus tag
AT3G50790
See related
Araport:AT3G50790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (18879893..18882237, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene calmodulin-like 41 Neighboring gene BTB/POZ domain protein Neighboring gene uncharacterized protein Neighboring gene PLATZ transcription factor family protein Neighboring gene Uncharacterized protein family (UPF0497)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001339481.1
NM_114939.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
esterase/lipase/thioesterase family protein
NP_190648.1
  • esterase/lipase/thioesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0017, hydrolase-like, conserved site (InterPro:IPR000952), AB-hydrolase YheT, putative (InterPro:IPR012020), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G49950.1); Has 2554 Blast hits to 2547 proteins in 951 species: Archae - 0; Bacteria - 1494; Metazoa - 334; Fungi - 200; Plants - 135; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18879893..18882237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114939.3 → NP_190648.1  esterase/lipase/thioesterase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190648.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKA3, Q9SVL9
    Conserved Domains (2) summary
    PLN02511
    Location:19 → 401
    PLN02511; hydrolase
    cl21494
    Location:55 → 387
    Abhydrolase; alpha/beta hydrolases

  2. NM_001339481.1 → NP_001326079.1  esterase/lipase/thioesterase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKA3, Q9SVL9
Nucleotide Protein
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