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glycosyl hydrolase family protein 43 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824150, updated on 18-Sep-2024

Summary

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Official Full Name
glycosyl hydrolase family protein 43
Primary source
TAIR:AT3G49880
Locus tag
AT3G49880
See related
Araport:AT3G49880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (18496182..18498901)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like A1B Neighboring gene ADP-ribosylation factor-like A1C Neighboring gene uncharacterized protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Golgi-localized exo-β1,3-galactosidases involved in cell expansion and root growth in Arabidopsis. Nibbering P, et al. J Biol Chem, 2020 Jul 31. PMID 32493777, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_114848.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-galactosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within classical arabinogalactan protein metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase family protein 43
NP_190557.1
  • glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: Arabinanase/levansucrase/invertase (TAIR:AT5G67540.2); Has 1254 Blast hits to 1248 proteins in 224 species: Archae - 2; Bacteria - 1011; Metazoa - 1; Fungi - 133; Plants - 55; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18496182..18498901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114848.4 → NP_190557.1  glycosyl hydrolase family protein 43 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190557.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKE0, A0A384KY98, A0A7G2EW12, Q9M2X0
    Conserved Domains (1) summary
    cd18825
    Location:145 → 425
    GH43_CtGH43-like; Glycosyl hydrolase family 43 protein similar to Clostridium thermocellum exo-beta-1,3-galactanase CtGH43 and Ruminococcus champanellensis arabinanase Ara43A
Nucleotide Protein
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