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MICPUN_79000 predicted protein [ Micromonas commoda ]

Gene ID: 8241001, updated on 16-Nov-2023

Summary

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Gene symbol
MICPUN_79000
Gene description
predicted protein
Locus tag
MICPUN_79000
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Micromonas commoda (strain: RCC299)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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See MICPUN_79000 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_013039.1 (1773361..1774401, complement)

Chromosome 2 - NC_013039.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene thiamine pyrophosphokinase Neighboring gene 4-diphosphocytidyl-2c-methyl-d-erythritol synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013039.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tryptophan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tryptophan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013039.1 Reference assembly

    Range
    1773361..1774401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002500255.1 → XP_002500301.1  predicted protein [Micromonas commoda]

    See identical proteins and their annotated locations for XP_002500301.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1DZ74
    Conserved Domains (1) summary
    PLN02591
    Location:22 → 271
    PLN02591; tryptophan synthase
Nucleotide Protein
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