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Plant invertase/pectin methylesterase inhibitor superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824083, updated on 18-Sep-2024

Summary

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Official Full Name
Plant invertase/pectin methylesterase inhibitor superfamily
Primary source
TAIR:AT3G49220
Locus tag
AT3G49220
See related
Araport:AT3G49220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (18249663..18253911)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene defective in meristem silencing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PECTIN METHYLESTERASE34 Contributes to Heat Tolerance through Its Role in Promoting Stomatal Movement. Huang YC, et al. Plant Physiol, 2017 Jun. PMID 28381503, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_114781.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of stomatal movement IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Plant invertase/pectin methylesterase inhibitor superfamily
NP_190491.1
  • Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase PCR fragment F (TAIR:AT5G53370.1); Has 3279 Blast hits to 3212 proteins in 470 species: Archae - 6; Bacteria - 866; Metazoa - 1; Fungi - 193; Plants - 2188; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18249663..18253911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339404.1 → NP_001327222.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRM9

  2. NM_001339405.1 → NP_001327221.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAJ2, A0A1I9LRM8

  3. NM_114781.5 → NP_190491.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190491.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WPK1, Q0WVR8, Q9FPG7, Q9M3B0
    UniProtKB/TrEMBL
    A0A178VAJ2, A0A654FEB8
    Conserved Domains (1) summary
    PLN02484
    Location:1 → 598
    PLN02484; probable pectinesterase/pectinesterase inhibitor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M3B0.1

Gene LinkOut

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