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U-box domain-containing protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824068, updated on 18-Sep-2024

Summary

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Official Full Name
U-box domain-containing protein kinase family protein
Primary source
TAIR:AT3G49060
Locus tag
AT3G49060
See related
Araport:AT3G49060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (18186898..18192145, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ATP-binding protein Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene Ribosomal protein S5 domain 2-like superfamily protein Neighboring gene Signal recognition particle, SRP9/SRP14 subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339396.1
NM_114765.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
U-box domain-containing protein kinase family protein
NP_001190037.1
  • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1).
NP_566915.1
  • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 84033 Blast hits to 83330 proteins in 4034 species: Archae - 70; Bacteria - 7751; Metazoa - 31165; Fungi - 5115; Plants - 29189; Viruses - 207; Other Eukaryotes - 10536 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18186898..18192145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203108.1 → NP_001190037.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190037.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGT3, F4IWQ9
    Conserved Domains (4) summary
    smart00504
    Location:728 → 791
    Ubox; Modified RING finger domain
    cd01989
    Location:16 → 169
    STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
    pfam00069
    Location:473 → 691
    Pkinase; Protein kinase domain
    cl21453
    Location:474 → 703
    PKc_like; Protein Kinases, catalytic domain

  2. NM_114765.3 → NP_566915.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566915.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YL5, Q67YP5, Q94A51, Q9SMU3
    UniProtKB/TrEMBL
    A0A178VGT3, A0A5S9XJZ8, A0A654FG23
    Conserved Domains (4) summary
    smart00504
    Location:738 → 801
    Ubox; Modified RING finger domain
    cd01989
    Location:16 → 169
    STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
    pfam07714
    Location:465 → 710
    Pkinase_Tyr; Protein tyrosine kinase
    cl21453
    Location:466 → 713
    PKc_like; Protein Kinases, catalytic domain

  3. NM_001339396.1 → NP_001326453.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGT3, A0A1I9LPB5, A0A5S9XJZ8, A0A654FG23
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94A51.1

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