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RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824049, updated on 18-Sep-2024

Summary

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Official Full Name
RNI-like superfamily protein
Primary source
TAIR:AT3G48880
Locus tag
AT3G48880
See related
Araport:AT3G48880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (18126788..18129251)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphate transporter 3;2 Neighboring gene coiled-coil protein Neighboring gene Clp ATPase Neighboring gene membrane-associated progesterone binding protein 3 Neighboring gene single-stranded DNA endonuclease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SCF(SNIPER4) controls the turnover of two redundant TRAF proteins in plant immunity. Huang J, et al. Plant J, 2018 Aug. PMID 29770510
  2. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001339387.1
NM_114747.5
NM_180340.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables SCF ubiquitin ligase complex binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNI-like superfamily protein
NP_190457.1
  • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G11580.1); Has 401 Blast hits to 392 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_850671.1
  • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G11580.1); Has 401 Blast hits to 392 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18126788..18129251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180340.3 → NP_850671.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850671.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L8M6, Q9M2Z5
    UniProtKB/TrEMBL
    A0A178VLS3, A0A5S9XJ76
    Conserved Domains (3) summary
    cd09293
    Location:91 → 250
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:126 → 151
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:13 → 58
    F-box-like

  2. NM_114747.5 → NP_190457.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190457.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L8M6, Q9M2Z5
    UniProtKB/TrEMBL
    A0A178VLS3, A0A5S9XJ76
    Conserved Domains (3) summary
    cd09293
    Location:91 → 250
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:126 → 151
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:13 → 58
    F-box-like

  3. NM_001339387.1 → NP_001327846.1  RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L8M6, Q9M2Z5
    UniProtKB/TrEMBL
    A0A178VLS3, A0A5S9XJ76
    Conserved Domains (3) summary
    cd09293
    Location:91 → 250
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:126 → 151
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:13 → 58
    F-box-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2Z5.1

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