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NPC6 non-specific phospholipase C6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824021, updated on 18-Sep-2024

Summary

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Official Symbol
NPC6
Official Full Name
non-specific phospholipase C6
Primary source
TAIR:AT3G48610
Locus tag
AT3G48610
See related
Araport:AT3G48610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
non-specific phospholipase C6
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Genomic context

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See NPC6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (18011475..18014204, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit C1 Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene Outer membrane OMP85 family protein Neighboring gene miscRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Non-specific phospholipases C2 and C6 redundantly function in pollen tube growth via triacylglycerol production in Arabidopsis. Bose D, et al. Plant J, 2021 Apr. PMID 33506578
  2. Non-specific phospholipases C, NPC2 and NPC6, are required for root growth in Arabidopsis. Ngo AH, et al. Plant J, 2019 Nov. PMID 31400172
  3. A pair of nonspecific phospholipases C, NPC2 and NPC6, are involved in gametophyte development and glycerolipid metabolism in Arabidopsis. Ngo AH, et al. New Phytol, 2018 Jul. PMID 29655284
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Non-specific phospholipases C2 and C6 redundantly function in pollen tube growth via triacylglycerol production in Arabidopsis.
    Title: Non-specific phospholipases C2 and C6 redundantly function in pollen tube growth via triacylglycerol production in Arabidopsis.
  2. NPC6 is involved in the root growth by producing phosphocholine.
    Title: Non-specific phospholipases C, NPC2 and NPC6, are required for root growth in Arabidopsis.
  3. The results demonstrate that NPC2 and NPC6 play crucial roles in gametogenesis during flower development.
    Title: A pair of nonspecific phospholipases C, NPC2 and NPC6, are involved in gametophyte development and glycerolipid metabolism in Arabidopsis.
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General gene information

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Homology

NM_114720.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phospholipase C activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within gametophyte development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within phospholipid catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within root development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
non-specific phospholipase C6
NP_190430.2
  • non-specific phospholipase C6 (NPC6); FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C1 (TAIR:AT1G07230.1); Has 2244 Blast hits to 2129 proteins in 399 species: Archae - 32; Bacteria - 1880; Metazoa - 0; Fungi - 127; Plants - 152; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18011475..18014204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114720.4 → NP_190430.2  non-specific phospholipase C6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190430.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H965, Q9SMN8
    UniProtKB/TrEMBL
    A0A178VI01, A0A5S9XIZ4
    Conserved Domains (1) summary
    pfam04185
    Location:39 → 394
    Phosphoesterase; Phosphoesterase family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H965.1

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