U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SWIB complex BAF60b domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824020, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
SWIB complex BAF60b domain-containing protein
Primary source
TAIR:AT3G48600
Locus tag
AT3G48600
See related
Araport:AT3G48600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (18010026..18011440, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 11 Neighboring gene nuclear factor Y, subunit C1 Neighboring gene non-specific phospholipase C6 Neighboring gene Outer membrane OMP85 family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_114719.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SWIB complex BAF60b domain-containing protein
NP_001190034.1
  • SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1).
NP_190429.2
  • SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 322 Blast hits to 306 proteins in 73 species: Archae - 0; Bacteria - 9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18010026..18011440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203105.2 → NP_001190034.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190034.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFY1, F4JF32
    Conserved Domains (1) summary
    pfam02201
    Location:37 → 111
    SWIB; SWIB/MDM2 domain

  2. NM_114719.3 → NP_190429.2  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190429.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJ44, F4JF33
    Conserved Domains (2) summary
    pfam02201
    Location:37 → 111
    SWIB; SWIB/MDM2 domain
    cl02489
    Location:137 → 174
    SWIB; SWIB/MDM2 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools