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XTH11 xyloglucan endotransglucosylase/hydrolase 11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824018, updated on 18-Sep-2024

Summary

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Official Symbol
XTH11
Official Full Name
xyloglucan endotransglucosylase/hydrolase 11
Primary source
TAIR:AT3G48580
Locus tag
AT3G48580
See related
Araport:AT3G48580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
xyloglucan endotransglucosylase/hydrolase 11
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Genomic context

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See XTH11 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (18007098..18008535)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene secE/sec61-gamma protein transport protein Neighboring gene miscRNA Neighboring gene nuclear factor Y, subunit C1 Neighboring gene SWIB complex BAF60b domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress. De Caroli M, et al. Plant J, 2021 Jul. PMID 33932060, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress.
    Title: Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress.
Submit: New GeneRIF Correction

General gene information

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NM_001203104.1
NM_001339374.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
enables polysaccharide binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in glucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 11
NP_001190033.1
  • xyloglucan endotransglucosylase/hydrolase 11 (XTH11); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: embryo, pedicel, flower, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 3 (TAIR:AT3G25050.1).
NP_566910.1
  • xyloglucan endotransglucosylase/hydrolase 11 (XTH11); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: embryo, pedicel, flower, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 3 (TAIR:AT3G25050.1); Has 1650 Blast hits to 1644 proteins in 223 species: Archae - 2; Bacteria - 196; Metazoa - 0; Fungi - 82; Plants - 1314; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18007098..18008535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114717.3 → NP_566910.1  xyloglucan endotransglucosylase/hydrolase 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566910.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1ECL3, Q9SMP1
    UniProtKB/TrEMBL
    A0A5S9XJV0, A0A654FFW9
    Conserved Domains (1) summary
    cl22861
    Location:29 → 273
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. NM_001203104.1 → NP_001190033.1  xyloglucan endotransglucosylase/hydrolase 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190033.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJV0, F4JF30
    Conserved Domains (1) summary
    cl22861
    Location:29 → 253
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  3. NM_001339374.1 → NP_001326333.1  xyloglucan endotransglucosylase/hydrolase 11 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNY6, A0A7G2EPJ4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SMP1.2

Gene LinkOut

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