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RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824004, updated on 18-Sep-2024

Summary

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Official Full Name
RPM1-interacting protein 4 (RIN4) family protein
Primary source
TAIR:AT3G48450
Locus tag
AT3G48450
See related
Araport:AT3G48450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (17943933..17945138, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene relative of early flowering 6 Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene embryo defective 2423 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001339370.1
NM_114704.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RPM1-interacting protein 4 (RIN4) family protein
NP_566905.1
  • RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT5G63270.1); Has 297 Blast hits to 296 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17943933..17945138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114704.4 → NP_566905.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566905.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V854, A0A654FIB0, Q8LCF4
    Conserved Domains (1) summary
    pfam05627
    Location:5 → 40
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

  2. NM_001339370.1 → NP_001325747.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V854, A0A654FIB0, Q8LCF4
    Conserved Domains (1) summary
    pfam05627
    Location:5 → 40
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr
Nucleotide Protein
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