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DnaJ/Hsp40 cysteine-rich domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823919, updated on 18-Sep-2024

Summary

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Official Full Name
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Primary source
TAIR:AT3G47650
Locus tag
AT3G47650
See related
Araport:AT3G47650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (17569424..17570607)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene translocator assembly/maintenance protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2. Aigner H, et al. Science, 2017 Dec 8. PMID 29217567
  2. Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly. Wang R, et al. Mol Plant, 2023 Dec 4. PMID 37853692
  3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_114633.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein folding chaperone IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein folding chaperone ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in chaperone-mediated protein folding ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ribulose bisphosphate carboxylase complex assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in ribulose bisphosphate carboxylase complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ribulose bisphosphate carboxylase complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
part_of protein folding chaperone complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of protein folding chaperone complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
DnaJ/Hsp40 cysteine-rich domain superfamily protein
NP_190349.1
  • DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 88 Blast hits to 88 proteins in 28 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17569424..17570607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114633.4 → NP_190349.1  DnaJ/Hsp40 cysteine-rich domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190349.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VHR7, Q9SN73
    UniProtKB/TrEMBL
    A0A384KD29, A0A5S9XKE1
    Conserved Domains (1) summary
    PTZ00037
    Location:71 → 125
    PTZ00037; DnaJ_C chaperone protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SN73.1

Gene LinkOut

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