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Ribosomal protein S10p/S20e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823891, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S10p/S20e family protein
Primary source
TAIR:AT3G47370
Locus tag
AT3G47370
See related
Araport:AT3G47370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (17453423..17454730, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hydroxysteroid dehydrogenase 2 Neighboring gene hydroxysteroid dehydrogenase 3 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene ncRNA Neighboring gene cytidine/deoxycytidylate deaminase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
  2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  5. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001035749.3
NM_114605.3
NM_180334.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in nucleolus HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S10p/S20e family protein
NP_001030826.1
  • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_190321.1
  • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7480 Blast hits to 7480 proteins in 2601 species: Archae - 270; Bacteria - 4741; Metazoa - 380; Fungi - 140; Plants - 182; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).
NP_850665.1
  • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7480 Blast hits to 7480 proteins in 2601 species: Archae - 270; Bacteria - 4741; Metazoa - 380; Fungi - 140; Plants - 182; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17453423..17454730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114605.3 → NP_190321.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190321.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9STY6
    UniProtKB/TrEMBL
    A0A178VBU3, A0A5S9XJE6, Q8H189
    Conserved Domains (1) summary
    cl00314
    Location:4 → 119
    Ribosomal_S10; Ribosomal protein S10p/S20e

  2. NM_180334.2 → NP_850665.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850665.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9STY6
    UniProtKB/TrEMBL
    A0A178VBU3, A0A5S9XJE6, Q8H189
    Conserved Domains (1) summary
    cl00314
    Location:4 → 119
    Ribosomal_S10; Ribosomal protein S10p/S20e

  3. NM_001035749.3 → NP_001030826.1  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030826.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9STY6
    UniProtKB/TrEMBL
    A0A178VBU3, A0A5S9XJE6, Q8H189
    Conserved Domains (1) summary
    cl00314
    Location:4 → 119
    Ribosomal_S10; Ribosomal protein S10p/S20e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9STY6.1

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