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Glycosyl hydrolases family 31 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823737, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolases family 31 protein
Primary source
TAIR:AT3G45940
Locus tag
AT3G45940
See related
Araport:AT3G45940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (16886226..16889171, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Histone superfamily protein Neighboring gene tRNA-Val Neighboring gene Pre-mRNA splicing Prp18-interacting factor Neighboring gene tRNA-Val

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_114463.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alpha-D-xyloside xylohydrolase IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Glycosyl hydrolases family 31 protein
NP_190180.1
  • Glycosyl hydrolases family 31 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-xylosidase 1 (TAIR:AT1G68560.1); Has 5440 Blast hits to 5077 proteins in 1113 species: Archae - 86; Bacteria - 3115; Metazoa - 813; Fungi - 823; Plants - 272; Viruses - 2; Other Eukaryotes - 329 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16886226..16889171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114463.1 → NP_190180.1  Glycosyl hydrolases family 31 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190180.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J6T7, Q9LZT7
    UniProtKB/TrEMBL
    A0A5S9XIQ3, A0A654FD60
    Conserved Domains (3) summary
    cd14752
    Location:162 → 280
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam16863
    Location:41 → 169
    NtCtMGAM_N; N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
    pfam01055
    Location:261 → 707
    Glyco_hydro_31; Glycosyl hydrolases family 31
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J6T7.1

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