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RNA binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823705, updated on 18-Sep-2024

Summary

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Official Full Name
RNA binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT3G45630
Locus tag
AT3G45630
See related
Araport:AT3G45630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (16748092..16753843, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tetraspanin3 Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene mitogen-activated protein kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339212.1
NM_114432.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
RNA binding (RRM/RBD/RNP motifs) family protein
NP_190149.1
  • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16748092..16753843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114432.3 → NP_190149.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190149.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VH64, A0A5S9XI36, A0A654FD35, Q9M1E4
    Conserved Domains (1) summary
    COG5175
    Location:6 → 411
    MOT2; Transcriptional repressor [Transcription]

  2. NM_001339212.1 → NP_001327582.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VH64, A0A5S9XI36, A0A654FD35, Q9M1E4
    Conserved Domains (1) summary
    COG5175
    Location:6 → 411
    MOT2; Transcriptional repressor [Transcription]
Nucleotide Protein
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