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RING/U-box protein with C6HC-type zinc finger [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823700, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box protein with C6HC-type zinc finger
Primary source
TAIR:AT3G45580
Locus tag
AT3G45580
See related
Araport:AT3G45580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (16729989..16731511, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box protein with C6HC-type zinc finger domain-containing protein Neighboring gene tRNA-intron endonuclease Neighboring gene ncRNA Neighboring gene splicing endonuclease 1 Neighboring gene ncRNA Neighboring gene tetraspanin3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box protein with C6HC-type zinc finger
NP_190144.1
  • RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger domain (TAIR:AT3G45570.1); Has 2926 Blast hits to 2906 proteins in 216 species: Archae - 0; Bacteria - 2; Metazoa - 1215; Fungi - 592; Plants - 693; Viruses - 1; Other Eukaryotes - 423 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16729989..16731511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114427.1 → NP_190144.1  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190144.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHS2, Q9M1E9
    Conserved Domains (3) summary
    smart00647
    Location:241 → 308
    IBR; In Between Ring fingers
    pfam01485
    Location:326 → 369
    IBR; IBR domain, a half RING-finger domain
    cl14782
    Location:74 → 154
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
Nucleotide Protein
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