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NRT2.6 high affinity nitrate transporter 2.6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823641, updated on 18-Sep-2024

Summary

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Official Symbol
NRT2.6
Official Full Name
high affinity nitrate transporter 2.6
Primary source
TAIR:AT3G45060
Locus tag
AT3G45060
See related
Araport:AT3G45060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6; ATNRT2.6; high affinity nitrate transporter 2.6
Summary
member of High affinity nitrate transporter family
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Genomic context

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See NRT2.6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (16477561..16479559, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphatidate cytidylyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the Nrt2.6 gene in Arabidopsis thaliana: a link with plant response to biotic and abiotic stress. Dechorgnat J, et al. PLoS One, 2012. PMID 22880003, Free PMC Article
  2. The NRT2.5 and NRT2.6 genes are involved in growth promotion of Arabidopsis by the plant growth-promoting rhizobacterium (PGPR) strain Phyllobacterium brassicacearum STM196. Kechid M, et al. New Phytol, 2013 Apr. PMID 23398541
  3. Nitrate transport capacity of the Arabidopsis thaliana NRT2 family members and their interactions with AtNAR2.1. Kotur Z, et al. New Phytol, 2012 May. PMID 22432443
  4. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. NRT2.5 and NRT2.6, which are preferentially expressed in leaves, play an essential role in plant growth promotion by the rhizospheric bacterium STM196.
    Title: The NRT2.5 and NRT2.6 genes are involved in growth promotion of Arabidopsis by the plant growth-promoting rhizobacterium (PGPR) strain Phyllobacterium brassicacearum STM196.
  2. A correlation was found between NRT2.6 expression and ROS species accumulation in response to infection by E. amylovora and treatment with the redox-active herbicide methyl viologen.
    Title: Characterization of the Nrt2.6 gene in Arabidopsis thaliana: a link with plant response to biotic and abiotic stress.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_114375.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nitrate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables nitrate transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
high affinity nitrate transporter 2.6
NP_190092.1
  • high affinity nitrate transporter 2.6 (NRT2.6); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2.3 (TAIR:AT5G60780.1); Has 6705 Blast hits to 6593 proteins in 1499 species: Archae - 65; Bacteria - 5860; Metazoa - 18; Fungi - 311; Plants - 270; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16477561..16479559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114375.5 → NP_190092.1  high affinity nitrate transporter 2.6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190092.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LXH0
    UniProtKB/TrEMBL
    A0A178V6D4, A0A5S9XI32, A0A7G2EQC4
    Conserved Domains (1) summary
    PLN00028
    Location:38 → 516
    PLN00028; nitrate transmembrane transporter; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXH0.1

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