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Class II aaRS and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823604, updated on 18-Sep-2024

Summary

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Official Full Name
Class II aaRS and biotin synthetases superfamily protein
Primary source
TAIR:AT3G44740
Locus tag
AT3G44740
See related
Araport:AT3G44740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (16295853..16297970, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene kinesin-like protein 1 Neighboring gene PHYTOSULFOKINE 3 PRECURSOR Neighboring gene histone deacetylase 3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339173.1
NM_001339174.1
NM_001339175.1
NM_001339176.1
NM_114343.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Class II aaRS and biotin synthetases superfamily protein
NP_001319685.1
  • Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 3168 Blast hits to 2607 proteins in 995 species: Archae - 349; Bacteria - 1331; Metazoa - 339; Fungi - 293; Plants - 132; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16295853..16297970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339173.1 → NP_001319685.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J376

  2. NM_114343.6 → NP_190060.5  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190060.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J376
    Conserved Domains (1) summary
    cl00268
    Location:87 → 226
    class_II_aaRS-like_core; Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches ...

  3. NM_001339174.1 → NP_001326391.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP49

  4. NM_001339175.1 → NP_001326390.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J376

  5. NM_001339176.1 → NP_001326392.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J376
Nucleotide Protein
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