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GH9A4 glycosyl hydrolase 9A4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823499, updated on 18-Sep-2024

Summary

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Official Symbol
GH9A4
Official Full Name
glycosyl hydrolase 9A4
Primary source
TAIR:AT3G43860
Locus tag
AT3G43860
See related
Araport:AT3G43860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGH9A4; glycosyl hydrolase 9A4
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Genomic context

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See GH9A4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (15706954..15709989)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression patterns of two Arabidopsis endo-beta-1,4-glucanase genes (At3g43860, At4g39000) in reproductive development. Xie XJ, et al. Mol Biol (Mosk), 2011 May-Jun. PMID 21790012
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. these results suggested that endo-beta-1,4-D-glucanases At3g43860 and At4g39000 play specific roles in Arabidopsis sexual reproduction.
    Title: Expression patterns of two Arabidopsis endo-beta-1,4-glucanase genes (At3g43860, At4g39000) in reproductive development.
Submit: New GeneRIF Correction

General gene information

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NM_001339113.1
NM_114254.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9A4
NP_189972.2
  • glycosyl hydrolase 9A4 (GH9A4); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1796 Blast hits to 1785 proteins in 262 species: Archae - 2; Bacteria - 633; Metazoa - 188; Fungi - 19; Plants - 915; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    15706954..15709989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114254.3 → NP_189972.2  glycosyl hydrolase 9A4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189972.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYG3, Q9LZG2
    UniProtKB/TrEMBL
    A0A654FH76
    Conserved Domains (1) summary
    PLN02909
    Location:1 → 486
    PLN02909; Endoglucanase

  2. NM_001339113.1 → NP_001327805.1  glycosyl hydrolase 9A4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYG3, Q9LZG2
    UniProtKB/TrEMBL
    A0A654FH76
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYG3.1

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