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zinc ion binding / nucleic acid binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823186, updated on 18-Sep-2024

Summary

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Official Full Name
zinc ion binding / nucleic acid binding protein
Primary source
TAIR:AT3G42140
Locus tag
AT3G42140
See related
Araport:AT3G42140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (14302060..14303018, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
zinc ion binding / nucleic acid binding protein
NP_189800.1
  • zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 184 Blast hits to 184 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 11; Plants - 147; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    14302060..14303018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114081.1 → NP_189800.1  zinc ion binding / nucleic acid binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189800.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VI52, A0A654FI50, A0A7G2EU53, Q9M2N8
    Conserved Domains (2) summary
    pfam14111
    Location:31 → 136
    DUF4283; Domain of unknown function (DUF4283)
    pfam14392
    Location:148 → 171
    zf-CCHC_4; Zinc knuckle
Nucleotide Protein
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