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retrotransposon ORF-1 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822850, updated on 18-Sep-2024

Summary

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Official Full Name
retrotransposon ORF-1 protein
Primary source
TAIR:AT3G30820
Locus tag
AT3G30820
See related
Araport:AT3G30820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (12529843..12531235)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113986.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
retrotransposon ORF-1 protein
NP_189706.1
  • Arabidopsis retrotransposon ORF-1 protein; CONTAINS InterPro DOMAIN/s: Arabidopsis retrotransposon ORF-1 protein (InterPro:IPR004312); BEST Arabidopsis thaliana protein match is: Arabidopsis retrotransposon ORF-1 protein (TAIR:AT2G14000.1); Has 20 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    12529843..12531235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113986.1 → NP_189706.1  retrotransposon ORF-1 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189706.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V610, F4J7V3
    Conserved Domains (1) summary
    pfam03078
    Location:89 → 328
    ATHILA; ATHILA ORF-1 family
Nucleotide Protein
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