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Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822768, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase superfamily protein
Primary source
TAIR:AT3G30540
Locus tag
AT3G30540
See related
Araport:AT3G30540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (12144792..12146502, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclease Neighboring gene basic leucine-zipper 42 Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase superfamily protein
NP_189675.2
  • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G10900.1); Has 710 Blast hits to 700 proteins in 174 species: Archae - 7; Bacteria - 189; Metazoa - 0; Fungi - 183; Plants - 303; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    12144792..12146502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113955.2 → NP_189675.2  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189675.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FBZ3
    Conserved Domains (1) summary
    cl23725
    Location:46 → 289
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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