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TDF1 Duplicated homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822477, updated on 18-Sep-2024

Summary

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Official Symbol
TDF1
Official Full Name
Duplicated homeodomain-like superfamily protein
Primary source
TAIR:AT3G28470
Locus tag
AT3G28470
See related
Araport:AT3G28470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATMYB35; DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1; MYB DOMAIN PROTEIN 35; MYB35
Summary
Member of the R2R3 factor gene family.
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Genomic context

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See TDF1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (10674508..10675724, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 25 Neighboring gene methyltransferase Neighboring gene Oxoglutarate/iron-dependent oxygenase Neighboring gene Oxoglutarate/iron-dependent oxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defective in Tapetal development and function 1 is essential for anther development and tapetal function for microspore maturation in Arabidopsis. Zhu J, et al. Plant J, 2008 Jul. PMID 18397379
  2. DYT1 directly regulates the expression of TDF1 for tapetum development and pollen wall formation in Arabidopsis. Gu JN, et al. Plant J, 2014 Dec. PMID 25284309
  3. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. Lou Y, et al. New Phytol, 2018 Jan. PMID 28940573
  4. A genetic pathway for tapetum development and function in Arabidopsis. Zhu J, et al. J Integr Plant Biol, 2011 Nov. PMID 21957980
  5. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The TDF1-AMS complex acts in concert to activate EXPB5 expression through a feed-forward loop. The identification of the regulatory pathway between TDF1 and AMS provides an interlocked feed-forward loop circuit that precisely regulates the transcriptional cascades that support anther development.
    Title: Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
  2. DYT1 regulates the expression of AMS, MS188/MYB80, TEK and MS1 for pollen wall formation, primarily via TDF1.
    Title: DYT1 directly regulates the expression of TDF1 for tapetum development and pollen wall formation in Arabidopsis.
  3. DYT1, TDF1 and AMS function in early tapetum development, while MS188 and MS1 are important for late tapetum development.
    Title: A genetic pathway for tapetum development and function in Arabidopsis.
  4. The identification and characterization of TDF1 as a synonym for MYB35 using a map-based cloning strategy is reported.
    Title: Defective in Tapetal development and function 1 is essential for anther development and tapetal function for microspore maturation in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_113767.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within anther wall tapetum development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in anther wall tapetum development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in callose localization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within microgametogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in microgametogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Duplicated homeodomain-like superfamily protein
NP_189488.1
  • DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1 (TDF1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1); Has 8909 Blast hits to 8197 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 781; Fungi - 493; Plants - 5873; Viruses - 5; Other Eukaryotes - 1757 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10674508..10675724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113767.2 → NP_189488.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189488.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MEZ1, O49770, Q9LSI7
    UniProtKB/TrEMBL
    A0A178VQ25, A0A654FBL4
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 131
    PLN03091; hypothetical protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSI7.1

Gene LinkOut

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