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CLEC16A-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822473, updated on 18-Sep-2024

Summary

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Official Full Name
CLEC16A-like protein
Primary source
TAIR:AT3G28430
Locus tag
AT3G28430
See related
Araport:AT3G28430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GFS9; green fluorescent seed 9; TRANSPARENT TESTA 9; TT9
Summary
Encodes a peripheral membrane protein localized at the Golgi apparatus that is involved in membrane trafficking, vacuole development and in flavonoid accumulation in the seed coat. Mutant seed color is pale brown.
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Sequence:
Chromosome: 3; NC_003074.8 (10656979..10662772, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ABC transporter family protein Neighboring gene Putative membrane lipoprotein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene CLAVATA3/ESR-RELATED 25

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GFS9 Affects Piecemeal Autophagy of Plastids in Young Seedlings of Arabidopsis thaliana. Ishida H, et al. Plant Cell Physiol, 2021 Nov 17. PMID 34086965
  2. GFS9/TT9 contributes to intracellular membrane trafficking and flavonoid accumulation in Arabidopsis thaliana. Ichino T, et al. Plant J, 2014 Nov. PMID 25116949
  3. Analysis of Arabidopsis mutants deficient in flavonoid biosynthesis. Shirley BW, et al. Plant J, 1995 Nov. PMID 8528278
  4. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GFS9 Affects Piecemeal Autophagy of Plastids in Young Seedlings of Arabidopsis thaliana.
    Title: GFS9 Affects Piecemeal Autophagy of Plastids in Young Seedlings of Arabidopsis thaliana.
  2. Plants use GFS9-mediated membrane trafficking machinery for delivery of not only proteins but also phytochemicals, such as flavonoids, to vacuoles.
    Title: GFS9/TT9 contributes to intracellular membrane trafficking and flavonoid accumulation in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_113763.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anthocyanin-containing compound biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cell fate specification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within flavonoid transport from endoplasmic reticulum to plant-type vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of vacuole organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extrinsic component of membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
CLEC16A-like protein
NP_566837.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10656979..10662772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113763.3 → NP_566837.1  CLEC16A-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566837.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z3C5, Q8W4P9, Q9LSJ0
    UniProtKB/TrEMBL
    A0A5S9XGK2, A0A654FDF1
    Conserved Domains (1) summary
    pfam09758
    Location:42 → 192
    FPL; Uncharacterized conserved protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W4P9.1

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