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YSL6 YELLOW STRIPE like 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822319, updated on 18-Sep-2024

Summary

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Official Symbol
YSL6
Official Full Name
YELLOW STRIPE like 6
Primary source
TAIR:AT3G27020
Locus tag
AT3G27020
See related
Araport:AT3G27020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtYSL6; YELLOW STRIPE like 6
Summary
Arabidopsis thaliana metal-nicotianamine transporter YSL6
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Genomic context

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See YSL6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (9961277..9964737, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene actin related protein 2 Neighboring gene TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 Neighboring gene uncharacterized protein Neighboring gene GPI-anchored-like protein (DUF 3339)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana Yellow Stripe1-Like4 and Yellow Stripe1-Like6 localize to internal cellular membranes and are involved in metal ion homeostasis. Conte SS, et al. Front Plant Sci, 2013. PMID 23898343, Free PMC Article
  2. The Arabidopsis YELLOW STRIPE LIKE4 and 6 transporters control iron release from the chloroplast. Divol F, et al. Plant Cell, 2013 Mar. PMID 23512854, Free PMC Article
  3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. YSL4 and YSL6 are required for iron to exit the chloroplasts.
    Title: The Arabidopsis YELLOW STRIPE LIKE4 and 6 transporters control iron release from the chloroplast.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_113616.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oligopeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within iron ion transmembrane transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid envelope IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
YELLOW STRIPE like 6
NP_566806.1
  • YELLOW STRIPE like 6 (YSL6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 4 (TAIR:AT5G41000.1); Has 1640 Blast hits to 1588 proteins in 511 species: Archae - 21; Bacteria - 808; Metazoa - 0; Fungi - 241; Plants - 449; Viruses - 1; Other Eukaryotes - 120 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9961277..9964737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113616.3 → NP_566806.1  YELLOW STRIPE like 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566806.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6R3K6, Q8L859, Q8LB74, Q9LSD4
    UniProtKB/TrEMBL
    A0A178VK88, A0A5S9XGH0
    Conserved Domains (1) summary
    pfam03169
    Location:37 → 657
    OPT; OPT oligopeptide transporter protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6R3K6.2

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