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Protein with RNI-like/FBD-like domain [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822309, updated on 18-Sep-2024

Summary

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Official Full Name
Protein with RNI-like/FBD-like domain
Primary source
TAIR:AT3G26930
Locus tag
AT3G26930
See related
Araport:AT3G26930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (9925555..9927393)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene dsRNA-binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113605.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Protein with RNI-like/FBD-like domain
NP_189328.2
  • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT4G13965.1); Has 974 Blast hits to 953 proteins in 26 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9925555..9927393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338845.1 → NP_001327583.1  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHA3, A0A1I9LSS0
    Conserved Domains (3) summary
    smart00579
    Location:366 → 443
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:141 → 162
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:162 → 186
    LRR_2; Leucine Rich Repeat

  2. NM_113605.3 → NP_189328.2  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189328.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q45GL3, Q9LJF7
    Conserved Domains (3) summary
    smart00579
    Location:321 → 398
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:96 → 117
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:117 → 141
    LRR_2; Leucine Rich Repeat
Nucleotide Protein
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