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SNM1 DNA repair metallo-beta-lactamase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822280, updated on 18-Sep-2024

Summary

Official Symbol
SNM1
Official Full Name
DNA repair metallo-beta-lactamase family protein
Primary source
TAIR:AT3G26680
Locus tag
AT3G26680
See related
Araport:AT3G26680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSNM1; SENSITIVE TO NITROGEN MUSTARD 1
Summary
involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.
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Genomic context

See SNM1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (9801169..9804282)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene glyceraldehyde 3-phosphate dehydrogenase A subunit Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene LOB domain-containing protein 24 Neighboring gene ncRNA Neighboring gene nudix hydrolase homolog 13 Neighboring gene Protein kinase superfamily protein Neighboring gene cofactor assembly of complex C

General gene information

NM_001338816.1
NM_001338817.1
NM_001338818.1
NM_180304.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
DNA repair metallo-beta-lactamase family protein
NP_001319649.1
  • SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 1210 Blast hits to 1152 proteins in 342 species: Archae - 175; Bacteria - 149; Metazoa - 283; Fungi - 254; Plants - 166; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
NP_001319650.1
  • SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_850635.1
  • SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 1211 Blast hits to 1153 proteins in 342 species: Archae - 176; Bacteria - 149; Metazoa - 283; Fungi - 254; Plants - 166; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9801169..9804282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180304.2 → NP_850635.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850635.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q38961, Q96280
    UniProtKB/TrEMBL
    A0A5S9XFW9, B9DG72
    Conserved Domains (2) summary
    cd16273
    Location:142 → 290
    SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
    pfam07522
    Location:360 → 466
    DRMBL; DNA repair metallo-beta-lactamase
  2. NM_001338816.1 → NP_001319649.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q38961, Q96280
    UniProtKB/TrEMBL
    A0A5S9XFW9, B9DG72
    Conserved Domains (2) summary
    cd16273
    Location:142 → 290
    SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
    pfam07522
    Location:360 → 466
    DRMBL; DNA repair metallo-beta-lactamase
  3. NM_001338817.1 → NP_001319650.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q38961, Q96280
    UniProtKB/TrEMBL
    A0A5S9XFW9, B9DG72
    Conserved Domains (2) summary
    cd16273
    Location:142 → 290
    SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
    pfam07522
    Location:360 → 466
    DRMBL; DNA repair metallo-beta-lactamase
  4. NM_001338818.1 → NP_001327585.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSS2, B9DG72
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