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Cellulase (glycosyl hydrolase family 5) protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822214, updated on 18-Sep-2024

Summary

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Official Full Name
Cellulase (glycosyl hydrolase family 5) protein
Primary source
TAIR:AT3G26140
Locus tag
AT3G26140
See related
Araport:AT3G26140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (9559555..9563322, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate/Fe(II)-dependent oxygenase family protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene cytochrome P450, family 71, subfamily B, polypeptide 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113521.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mannan endo-1,4-beta-mannosidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cellulase (glycosyl hydrolase family 5) protein
NP_189245.1
  • Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT1G13130.1); Has 359 Blast hits to 351 proteins in 117 species: Archae - 8; Bacteria - 143; Metazoa - 0; Fungi - 82; Plants - 110; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9559555..9563322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338792.1 → NP_001326000.1  Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMY2, A0A5S9XFQ7

  2. NM_001338793.1 → NP_001325999.1  Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMY1, A0A5S9XFQ7

  3. NM_113521.2 → NP_189245.1  Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189245.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ESU9, Q9LTM8
    Conserved Domains (2) summary
    cd00161
    Location:376 → 484
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl23725
    Location:41 → 323
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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