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F-box SKIP23-like protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822166, updated on 18-Sep-2024

Summary

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Official Full Name
F-box SKIP23-like protein (DUF295)
Primary source
TAIR:AT3G25750
Locus tag
AT3G25750
See related
Araport:AT3G25750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (9400955..9402088)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ethylene response DNA binding factor 3 Neighboring gene methionine aminopeptidase 1C Neighboring gene allene oxide cyclase 1 Neighboring gene allene oxide cyclase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box SKIP23-like protein (DUF295)
NP_189203.1
  • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G26160.1); Has 337 Blast hits to 336 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9400955..9402088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338765.1 → NP_001325458.1  F-box SKIP23-like protein (DUF295) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JA53, Q9LS04
    UniProtKB/TrEMBL
    A0A5S9XFS5, A0A654FBM3

  2. NM_113474.1 → NP_189203.1  F-box SKIP23-like protein (DUF295) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189203.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XFS5, A0A654FBM3
    Conserved Domains (3) summary
    PLN03215
    Location:5 → 346
    PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
    pfam00646
    Location:6 → 50
    F-box; F-box domain
    pfam03478
    Location:270 → 321
    DUF295; Protein of unknown function (DUF295)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LS04.2

Gene LinkOut

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