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RNA-directed DNA polymerase (reverse transcriptase)-related family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822161, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Primary source
TAIR:AT3G25720
Locus tag
AT3G25720
See related
Araport:AT3G25720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (9380234..9381405)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene non-LTR retrolelement reverse transcriptase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113471.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNA-directed DNA polymerase (reverse transcriptase)-related family protein
NP_189200.1
  • RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G10613.1); Has 517 Blast hits to 476 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9380234..9381405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113471.1 → NP_189200.1  RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189200.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3EB05
    Conserved Domains (1) summary
    pfam13966
    Location:153 → 186
    zf-RVT; zinc-binding in reverse transcriptase
Nucleotide Protein
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