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Auxin-responsive family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822123, updated on 18-Sep-2024

Summary

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Official Full Name
Auxin-responsive family protein
Primary source
TAIR:AT3G25290
Locus tag
AT3G25290
See related
Araport:AT3G25290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (9208861..9210653)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribonuclease H-like superfamily protein Neighboring gene Major facilitator superfamily protein Neighboring gene dCTP pyrophosphatase-like protein Neighboring gene Sodium Bile acid symporter family Neighboring gene serine carboxypeptidase-like 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A CYBDOM protein impacts iron homeostasis and primary root growth under phosphate deficiency in Arabidopsis. Clúa J, et al. Nat Commun, 2024 Jan 11. PMID 38212368, Free PMC Article
  2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035687.1
NM_113435.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ferric-chelate reductase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in primary root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Auxin-responsive family protein
NP_001030764.1
  • Auxin-responsive family protein; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT4G12980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_566763.1
  • Auxin-responsive family protein; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT4G12980.1); Has 645 Blast hits to 645 proteins in 99 species: Archae - 0; Bacteria - 6; Metazoa - 61; Fungi - 90; Plants - 468; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9208861..9210653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113435.3 → NP_566763.1  Auxin-responsive family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566763.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSE7
    UniProtKB/TrEMBL
    A0A178VBP8
    Conserved Domains (2) summary
    cd08760
    Location:187 → 373
    Cyt_b561_FRRS1_like; Eukaryotic cytochrome b(561), including the FRRS1 gene product
    cd09629
    Location:39 → 195
    DOMON_CIL1_like; DOMON-like domain of Brassica carinata CIL1 and similar proteins

  2. NM_001035687.1 → NP_001030764.1  Auxin-responsive family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030764.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSE7
    UniProtKB/TrEMBL
    A0A178VBP8
    Conserved Domains (2) summary
    cd08760
    Location:187 → 373
    Cyt_b561_FRRS1_like; Eukaryotic cytochrome b(561), including the FRRS1 gene product
    cd09629
    Location:39 → 195
    DOMON_CIL1_like; DOMON-like domain of Brassica carinata CIL1 and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSE7.1

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