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Vacuolar iron transporter (VIT) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822112, updated on 18-Sep-2024

Summary

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Official Full Name
Vacuolar iron transporter (VIT) family protein
Primary source
TAIR:AT3G25190
Locus tag
AT3G25190
See related
Araport:AT3G25190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtVTL5; MJL12.26; Vacuolar Iron Transporter-Like 5; VTL5
Summary
The gene encodes nodulin-like21 whose transcript abundance was repressed under conditions of Fe-deficient growth.
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (9174398..9175866)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 82, subfamily G, polypeptide 1 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Vacuolar-Iron-Transporter1-Like proteins mediate iron homeostasis in Arabidopsis. Gollhofer J, et al. PLoS One, 2014. PMID 25360591, Free PMC Article
  2. Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana. Gollhofer J, et al. Plant Physiol Biochem, 2011 May. PMID 21411332
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The expression of At3g25190 was repressed in response to iron deficiency in Arabidopsis roots.
    Title: Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_113425.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables iron ion transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in intracellular manganese ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular sequestering of iron ion IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to iron ion IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
Vacuolar iron transporter (VIT) family protein
NP_189156.1
  • Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1809 Blast hits to 1804 proteins in 621 species: Archae - 86; Bacteria - 1207; Metazoa - 0; Fungi - 93; Plants - 206; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9174398..9175866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113425.2 → NP_189156.1  Vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189156.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94JS5, Q9LSF6
    UniProtKB/TrEMBL
    A0A178VAT5, A0A5S9XFF4
    Conserved Domains (1) summary
    cl00278
    Location:34 → 185
    CCC1_like; CCC1-related family of proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSF6.1

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