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RALFL25 ralf-like 25 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822108, updated on 18-Sep-2024

Summary

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Official Symbol
RALFL25
Official Full Name
ralf-like 25
Primary source
TAIR:AT3G25165
Locus tag
AT3G25165
See related
Araport:AT3G25165
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ralf-like 25
Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
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Genomic context

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See RALFL25 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (9163340..9163938, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene ER lumen protein retaining receptor family protein Neighboring gene miscRNA Neighboring gene ralf-like 26 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113421.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hormone activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in calcium-mediated signaling ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell-cell signaling ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ralf-like 25
NP_566760.1
  • ralf-like 25 (RALFL25); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 26 (TAIR:AT3G25170.1); Has 33 Blast hits to 33 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9163340..9163938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113421.2 → NP_566760.1  ralf-like 25 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566760.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSG0
    UniProtKB/TrEMBL
    A0A178VM35, A0A5S9XFL2
    Conserved Domains (1) summary
    pfam05498
    Location:8 → 70
    RALF; Rapid ALkalinization Factor (RALF)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSG0.1

Gene LinkOut

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