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ER lumen protein retaining receptor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822107, updated on 18-Sep-2024

Summary

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Official Full Name
ER lumen protein retaining receptor family protein
Primary source
TAIR:AT3G25160
Locus tag
AT3G25160
See related
Araport:AT3G25160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (9160168..9162220, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family B protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene ralf-like 25 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113420.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ER retention sequence binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein retention in ER lumen IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ER lumen protein retaining receptor family protein
NP_189152.1
  • ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 889 Blast hits to 889 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 182; Plants - 232; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9160168..9162220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113420.3 → NP_189152.1  ER lumen protein retaining receptor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189152.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFM7, A0A654FBS5, Q5PNU5, Q84WD1
    Conserved Domains (1) summary
    pfam00810
    Location:74 → 217
    ER_lumen_recept; ER lumen protein retaining receptor
Nucleotide Protein
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