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XTH3 xyloglucan endotransglucosylase/hydrolase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822096, updated on 18-Sep-2024

Summary

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Official Symbol
XTH3
Official Full Name
xyloglucan endotransglucosylase/hydrolase 3
Primary source
TAIR:AT3G25050
Locus tag
AT3G25050
See related
Araport:AT3G25050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
xyloglucan endotransglucosylase/hydrolase 3
Summary
encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.
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Genomic context

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See XTH3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (9126851..9128416)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene endoplasmic reticulum retention defective 2B Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene RPM1 interacting protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The plant cell-wall enzyme AtXTH3 catalyses covalent cross-linking between cellulose and cello-oligosaccharide. Shinohara N, et al. Sci Rep, 2017 Apr 26. PMID 28443615, Free PMC Article
  2. A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis. Yokoyama R, et al. Plant Cell Physiol, 2001 Oct. PMID 11673616
  3. Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. Pouteau S, et al. Plant Physiol, 2008 Nov. PMID 18799658, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113409.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
enables polysaccharide binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables xyloglucan:xyloglucosyl transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellulose metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plant-type cell wall biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 3
NP_189141.1
  • xyloglucan endotransglucosylase/hydrolase 3 (XTH3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: photoperiodism, flowering, plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 2 (TAIR:AT4G13090.1); Has 2162 Blast hits to 2140 proteins in 309 species: Archae - 0; Bacteria - 288; Metazoa - 0; Fungi - 427; Plants - 1372; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9126851..9128416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113409.4 → NP_189141.1  xyloglucan endotransglucosylase/hydrolase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189141.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PEM0, Q9LJR7
    UniProtKB/TrEMBL
    A0A5S9XH05, A0A654FAF6, A0MEY2
    Conserved Domains (1) summary
    cd02176
    Location:33 → 289
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LJR7.1

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